PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G68200.2
Common NameT22E19.17
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 307aa    MW: 34099.1 Da    PI: 8.7083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G68200.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.33.4e-15223247226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tGtC+yGd C+FaHg
  AT1G68200.2 223 KTELCNKWQETGTCPYGDHCQFAHG 247
                  9***********************8 PP

2zf-CCCH19.91.3e-06260285126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykte Cr  +++  C+yG rC+F H+
  AT1G68200.2 260 YKTEVCRMVLAGDNCPYGHRCHFRHS 285
                  9**********55**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-18216254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-11218253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23221249IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9221248IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-12223247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-9255290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-13255288IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5259286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272259287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009046anatomyflower
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MENKIAPFSY SGSSAGNSSS GGVVSSSLYS DQLYKSTRNI MQQRQDMVNR EALCYTRLHE  60
ASLEAEALRL ENTELRSMNL RLKNELNSLI RSSIQNRFDH RSPLRMLSNL SIGGNDADEV  120
ENQNRTVNRD DVNDKSPTSV MENEDLNRSS LPKSISVRSN GYSKASQGGG GAAAQSGKPR  180
GTVTKPGTCG QVSTTKVYVR GGGKKEDQEE EIEVEVYNQG MTKTELCNKW QETGTCPYGD  240
HCQFAHGIKE LRPVIRHPRY KTEVCRMVLA GDNCPYGHRC HFRHSLSEQE KLVAAGFKPK  300
SSLKLIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-23223288570Butyrate response factor 2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184089720.0
Genevisible260430_at0.0
Expression AtlasAT1G68200-
AtGenExpressAT1G68200-
ATTED-IIAT1G68200-
Function -- GeneRIF ? help Back to Top
  1. The Arabidopsis thaliana CALLOSE DEFECTIVE MICROSPORE1 (CDM1) gene, encoding a tandem CCCH-type zinc finger protein, plays an important role in regulation of callose metabolism in male meiocytes.
    [PMID: 24567187]
  2. C3H14 and its homologue C3H15 redundantly regulate secondary wall formation and they additionally function in anther development.
    [PMID: 25732536]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G68200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G68200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464100.0DQ446410.1 Arabidopsis thaliana clone pENTR221-At1g68200 zinc finger family protein (At1g68200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077792.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F50.0C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLD7KW930.0D7KW93_ARALL; Zinc finger (CCCH-type) family protein (Fragment)
STRINGAT1G68200.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Vandepoele K, et al.
    Genome-wide identification of potential plant E2F target genes.
    Plant Physiol., 2005. 139(1): p. 316-28
    [PMID:16126853]
  3. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  4. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  5. Culligan KM,Robertson CE,Foreman J,Doerner P,Britt AB
    ATR and ATM play both distinct and additive roles in response to ionizing radiation.
    Plant J., 2006. 48(6): p. 947-61
    [PMID:17227549]
  6. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  7. Peiffer JA, et al.
    A spatial dissection of the Arabidopsis floral transcriptome by MPSS.
    BMC Plant Biol., 2008. 8: p. 43
    [PMID:18426585]
  8. Brady SM, et al.
    A stele-enriched gene regulatory network in the Arabidopsis root.
    Mol. Syst. Biol., 2011. 7: p. 459
    [PMID:21245844]
  9. Lu P, et al.
    The Arabidopsis CALLOSE DEFECTIVE MICROSPORE1 gene is required for male fertility through regulating callose metabolism during microsporogenesis.
    Plant Physiol., 2014. 164(4): p. 1893-904
    [PMID:24567187]
  10. Chai G, et al.
    Arabidopsis C3H14 and C3H15 have overlapping roles in the regulation of secondary wall thickening and anther development.
    J. Exp. Bot., 2015. 66(9): p. 2595-609
    [PMID:25732536]